What Percentage Does Ebay Take. Final value fees are paid on total cost, including postage. For top rated plus sellers, ebay provides a discount of 10% off the percentage portion of their final value fee which typically shows up at the end of the month when you receive your invoice. One of the two main fees for listing and selling on ebay is the insertion fee. The final value fee is calculated as a percentage of the total sale amount per item (item price + postage and handling charges), plus a. Ebay will not return any listing fees, and paypal will not return the flat rate $0.30 they took. Ebay and paypal fees current as of november 22, 2020. If the total amount of the sale is over £2,500 for a single item, you'll pay 3% for the portion of the sale price above £2,500.